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Merge #561

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561: Enriched documents batch reader r=curquiza a=Kerollmops

~This PR is based on #555 and must be rebased on main after it has been merged to ease the review.~
This PR contains the work in #555 and can be merged on main as soon as reviewed and approved.

- [x] Create an `EnrichedDocumentsBatchReader` that contains the external documents id.
- [x] Extract the primary key name and make it accessible in the `EnrichedDocumentsBatchReader`.
- [x] Use the external id from the `EnrichedDocumentsBatchReader` in the `Transform::read_documents`.
- [x] Remove the `update_primary_key` from the _transform.rs_ file.
- [x] Really generate the auto-generated documents ids.
- [x] Insert the (auto-generated) document ids in the document while processing it in `Transform::read_documents`.

Co-authored-by: Kerollmops <clement@meilisearch.com>
This commit is contained in:
bors[bot]
2022-07-21 07:08:50 +00:00
committed by GitHub
parent 5704235521 41a0ce07cb
commit 941af58239
29 changed files with 1668 additions and 1361 deletions
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152
benchmarks/benches/indexing.rs
View File

@ -132,12 +132,13 @@ fn indexing_songs_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -169,12 +170,13 @@ fn reindexing_songs_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -184,12 +186,13 @@ fn reindexing_songs_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -223,11 +226,12 @@ fn deleting_songs_in_batches_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let mut wtxn = index.write_txn().unwrap();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -279,11 +283,12 @@ fn indexing_songs_in_three_batches_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let mut wtxn = index.write_txn().unwrap();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS_1_2, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -294,19 +299,21 @@ fn indexing_songs_in_three_batches_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS_3_4, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS_4_4, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -339,13 +346,14 @@ fn indexing_songs_without_faceted_numbers(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -377,12 +385,13 @@ fn indexing_songs_without_faceted_fields(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_SONGS, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -415,12 +424,13 @@ fn indexing_wiki(c: &mut Criterion) {
let indexing_config =
IndexDocumentsConfig { autogenerate_docids: true, ..Default::default() };
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_WIKI_ARTICLES, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -452,12 +462,13 @@ fn reindexing_wiki(c: &mut Criterion) {
let indexing_config =
IndexDocumentsConfig { autogenerate_docids: true, ..Default::default() };
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_WIKI_ARTICLES, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -468,12 +479,13 @@ fn reindexing_wiki(c: &mut Criterion) {
let indexing_config =
IndexDocumentsConfig { autogenerate_docids: true, ..Default::default() };
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_WIKI_ARTICLES, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -507,11 +519,12 @@ fn deleting_wiki_in_batches_default(c: &mut Criterion) {
let mut wtxn = index.write_txn().unwrap();
let indexing_config =
IndexDocumentsConfig { autogenerate_docids: true, ..Default::default() };
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_WIKI_ARTICLES, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -564,12 +577,13 @@ fn indexing_wiki_in_three_batches(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config =
IndexDocumentsConfig { autogenerate_docids: true, ..Default::default() };
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents =
utils::documents_from(datasets_paths::SMOL_WIKI_ARTICLES_1_2, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -581,24 +595,26 @@ fn indexing_wiki_in_three_batches(c: &mut Criterion) {
let indexing_config =
IndexDocumentsConfig { autogenerate_docids: true, ..Default::default() };
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents =
utils::documents_from(datasets_paths::SMOL_WIKI_ARTICLES_3_4, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
let indexing_config =
IndexDocumentsConfig { autogenerate_docids: true, ..Default::default() };
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents =
utils::documents_from(datasets_paths::SMOL_WIKI_ARTICLES_4_4, "csv");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -631,12 +647,13 @@ fn indexing_movies_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::MOVIES, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -667,12 +684,13 @@ fn reindexing_movies_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::MOVIES, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -682,12 +700,13 @@ fn reindexing_movies_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::MOVIES, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -720,11 +739,12 @@ fn deleting_movies_in_batches_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let mut wtxn = index.write_txn().unwrap();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::MOVIES, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -775,12 +795,13 @@ fn indexing_movies_in_three_batches(c: &mut Criterion) {
// as we don't care about the time it takes.
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::MOVIES_1_2, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -791,21 +812,23 @@ fn indexing_movies_in_three_batches(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::MOVIES_3_4, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::MOVIES_4_4, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -861,12 +884,13 @@ fn indexing_nested_movies_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::NESTED_MOVIES, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -922,11 +946,12 @@ fn deleting_nested_movies_in_batches_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let mut wtxn = index.write_txn().unwrap();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::NESTED_MOVIES, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -984,12 +1009,13 @@ fn indexing_nested_movies_without_faceted_fields(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::NESTED_MOVIES, "json");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -1021,12 +1047,13 @@ fn indexing_geo(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_ALL_COUNTRIES, "jsonl");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -1058,12 +1085,13 @@ fn reindexing_geo(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_ALL_COUNTRIES, "jsonl");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -1074,12 +1102,13 @@ fn reindexing_geo(c: &mut Criterion) {
let config = IndexerConfig::default();
let indexing_config = IndexDocumentsConfig::default();
let mut wtxn = index.write_txn().unwrap();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_ALL_COUNTRIES, "jsonl");
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -1113,11 +1142,12 @@ fn deleting_geo_in_batches_default(c: &mut Criterion) {
let config = IndexerConfig::default();
let mut wtxn = index.write_txn().unwrap();
let indexing_config = IndexDocumentsConfig::default();
let mut builder =
let builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ())
.unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_ALL_COUNTRIES, "json");
builder.add_documents(documents).unwrap();
let documents = utils::documents_from(datasets_paths::SMOL_ALL_COUNTRIES, "jsonl");
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();

54
benchmarks/benches/utils.rs
View File

@ -7,12 +7,12 @@ use std::path::Path;
use criterion::BenchmarkId;
use heed::EnvOpenOptions;
use milli::documents::DocumentBatchReader;
use milli::documents::{DocumentsBatchBuilder, DocumentsBatchReader};
use milli::update::{
IndexDocuments, IndexDocumentsConfig, IndexDocumentsMethod, IndexerConfig, Settings,
};
use milli::{Filter, Index};
use serde_json::{Map, Value};
use milli::{Filter, Index, Object};
use serde_json::Value;
pub struct Conf<'a> {
/// where we are going to create our database.mmdb directory
@ -96,12 +96,10 @@ pub fn base_setup(conf: &Conf) -> Index {
update_method: IndexDocumentsMethod::ReplaceDocuments,
..Default::default()
};
let mut builder =
IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ()).unwrap();
let builder = IndexDocuments::new(&mut wtxn, &index, &config, indexing_config, |_| ()).unwrap();
let documents = documents_from(conf.dataset, conf.dataset_format);
builder.add_documents(documents).unwrap();
let (builder, user_error) = builder.add_documents(documents).unwrap();
user_error.unwrap();
builder.execute().unwrap();
wtxn.commit().unwrap();
@ -140,7 +138,7 @@ pub fn run_benches(c: &mut criterion::Criterion, confs: &[Conf]) {
}
}
pub fn documents_from(filename: &str, filetype: &str) -> DocumentBatchReader<impl BufRead + Seek> {
pub fn documents_from(filename: &str, filetype: &str) -> DocumentsBatchReader<impl BufRead + Seek> {
let reader =
File::open(filename).expect(&format!("could not find the dataset in: {}", filename));
let reader = BufReader::new(reader);
@ -150,39 +148,35 @@ pub fn documents_from(filename: &str, filetype: &str) -> DocumentBatchReader<imp
"jsonl" => documents_from_jsonl(reader).unwrap(),
otherwise => panic!("invalid update format {:?}", otherwise),
};
DocumentBatchReader::from_reader(Cursor::new(documents)).unwrap()
DocumentsBatchReader::from_reader(Cursor::new(documents)).unwrap()
}
fn documents_from_jsonl(mut reader: impl BufRead) -> anyhow::Result<Vec<u8>> {
let mut writer = Cursor::new(Vec::new());
let mut documents = milli::documents::DocumentBatchBuilder::new(&mut writer)?;
fn documents_from_jsonl(reader: impl BufRead) -> anyhow::Result<Vec<u8>> {
let mut documents = DocumentsBatchBuilder::new(Vec::new());
let mut buf = String::new();
while reader.read_line(&mut buf)? > 0 {
documents.extend_from_json(&mut buf.as_bytes())?;
buf.clear();
for result in serde_json::Deserializer::from_reader(reader).into_iter::<Object>() {
let object = result?;
documents.append_json_object(&object)?;
}
documents.finish()?;
Ok(writer.into_inner())
documents.into_inner().map_err(Into::into)
}
fn documents_from_json(reader: impl BufRead) -> anyhow::Result<Vec<u8>> {
let mut writer = Cursor::new(Vec::new());
let mut documents = milli::documents::DocumentBatchBuilder::new(&mut writer)?;
let mut documents = DocumentsBatchBuilder::new(Vec::new());
documents.extend_from_json(reader)?;
documents.finish()?;
documents.append_json_array(reader)?;
Ok(writer.into_inner())
documents.into_inner().map_err(Into::into)
}
fn documents_from_csv(reader: impl BufRead) -> anyhow::Result<Vec<u8>> {
let mut writer = Cursor::new(Vec::new());
milli::documents::DocumentBatchBuilder::from_csv(reader, &mut writer)?.finish()?;
let csv = csv::Reader::from_reader(reader);
Ok(writer.into_inner())
let mut documents = DocumentsBatchBuilder::new(Vec::new());
documents.append_csv(csv)?;
documents.into_inner().map_err(Into::into)
}
enum AllowedType {
@ -222,14 +216,14 @@ impl<R: Read> CSVDocumentDeserializer<R> {
}
impl<R: Read> Iterator for CSVDocumentDeserializer<R> {
type Item = anyhow::Result<Map<String, Value>>;
type Item = anyhow::Result<Object>;
fn next(&mut self) -> Option<Self::Item> {
let csv_document = self.documents.next()?;
match csv_document {
Ok(csv_document) => {
let mut document = Map::new();
let mut document = Object::new();
for ((field_name, field_type), value) in
self.headers.iter().zip(csv_document.into_iter())