chore(deps): bump versions (#792)

## Summary
- replicate the currently open Dependabot dependency updates in a single
branch
- update `smol-toml` to `^1.6.0`
- update `@biomejs/biome` to `2.3.8`
- regenerate `package-lock.json` and bundled `dist` output

## Notes
- `main` already includes the open Octokit Dependabot bumps, so those
PRs required no additional net changes here
- the open `smol-toml` Dependabot PR currently resolves to `^1.6.0`,
which is what this branch mirrors

## Validation
- `npm run all`

package.json

@@ -36,11 +36,11 @@
     "@octokit/plugin-paginate-rest": "^14.0.0",
     "@octokit/plugin-rest-endpoint-methods": "^17.0.0",
     "@renovatebot/pep440": "^4.2.1",
-    "smol-toml": "^1.4.2",
+    "smol-toml": "^1.6.0",
     "undici": "5.28.5"
   },
   "devDependencies": {
-    "@biomejs/biome": "2.3.7",
+    "@biomejs/biome": "2.3.8",
     "@types/js-yaml": "^4.0.9",
     "@types/node": "^24.10.1",
     "@types/semver": "^7.7.1",